Interactive Visualisation and Exploration of Biological Data

20/04/00


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Table of Contents

  1. Interactive Visualisation and Exploration of Biological Data

  2. Motivation

  3. Nearest Neighbour

  4. Result: Dendrogram

  5. PPT Slide

  6. Dendrograms

  7. Alternative

  8. Information Landscape

  9. Information Cube

  10. Cone Trees

  11. Are they really alternatives?

  12. Direct visualisation of distances!

  13. See the improvement?

  14. Clustering and Interactive Exploration

  15. Step 1: Similarity and Distance Measures

  16. Step 1: Similarity and Distance Measures

  17. Step 1: Similarity and Distance Measures

  18. Step 1: Similarity and Distance Measures

  19. Step 1: Desirable properties

  20. Step 1: Design methodology

  21. Step 1: Example TOPS

  22. Step 2: Two visual clustering algorithms

  23. Step 2: Layout with SVD

  24. Step 2: Layout with SVD

  25. Step 2: Layout with SVD

  26. Step 2: Spring embedding

  27. Step 3: Data Visualisation

  28. Step 3: 3D Visualisation

  29. Step 3: Extrinsic Visualisation

  30. Step 3: Web interface

  31. Case study - screen shot

  32. Multi-variate data

  33. Conclusions

  34. Future Work: Gene expression data

  35. Future Work: Phylogenetic Trees

  36. Future Work: Unrooted tree

  37. Credits

 Author: City University

Email: drg@cs.city.ac.uk

Home Page: http://www.cs.city.ac.uk/~drg