Possible patterns

• Tandem repeat ?-? acg acg

• Simple repeat ?-?-? acgaaaacg

• Multiple repeat ?-?-?-?-?acgaaacguuacg

• Palindrome ?-?r acg gca

• Stem loop ?-?-?rc acgaacgu

• Pseudoknot ?-?1-?-?2-?rc-?3-?rc auggcugaaggccgaucucagggcauaucgccgu

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