MRes Bioinformatics: Systems Biology Lab 4++: Networks: Petri nets and Snoopy

David Gilbert

The aim of this lab is to give you practical experience in the concepts from the Systems Biology lecture on Networks, as applied to Petri nets...

Resources

Snoopy, Petri net tool

Exercises

  1. Download and install Snoopy, a Petri net tool.

  2. Load the RKIP pathway, qualitative Petri net representation into Snoopy.

  3. Play the token game in Snoopy over this pathway.

  4. Load the RKIP pathway, quantitative Petri net representation into Snoopy, and try to simulate its behaviour.