spn [kholodenko_mapk_cascade] { constants: parameter: double V_1 = 2.5; double V_2 = 0.25; double V_5 = 0.75; double V_6 = 0.75; double V_9 = 0.5; double V_10 = 0.5; double K_1 = 9; double K_1_1 = 10; double K_2 = 8; double K_3 = 15; double n = 1; double K_4 = 15; double K_5 = 15; double K_6 = 15; double K_7 = 15; double K_8 = 15; double K_9 = 15; double K_10 = 15; double k_3 = 0.025; double k_4 = 0.025; double k_7 = 0.025; double k_8 = 0.025; double sf = 1; places: MKKK = 90; MKKK_P = 10; MKK = 280; MKK_P = 10; MKK_PP = 10; MAPK = 280; MAPK_P = 10; MAPK_PP = 10; transitions: a_1 : [MAPK_PP < 1] : [MKKK_P + 1] & [MKKK - 1] : sf*V_1*MKKK/((1+(MAPK_PP/K_1)^n)*(K_1_1+MKKK)) ; a_2 : : [MKKK + 1] & [MKKK_P - 1] : V_2*MKKK_P/(K_2+MKKK_P) ; b_1 : : [MKKK_P + 1] & [MKK_P + 1] & [MKKK_P - 1] & [MKK - 1] : sf*k_3*MKKK_P*MKK/(K_3+MKK) ; b_2 : : [MKKK_P + 1] & [MKK_PP + 1] & [MKKK_P - 1] & [MKK_P - 1] : sf*k_4*MKKK_P*MKK_P/(K_4+MKK_P) ; b_4 : : [MKK + 1] & [MKK_P - 1] : V_6*MKK_P/(K_6+MKK_P) ; b_3 : : [MKK_P + 1] & [MKK_PP - 1] : V_5*MKK_PP/(K_5+MKK_PP) ; c_1 : : [MKK_PP + 1] & [MAPK_P + 1] & [MKK_PP - 1] & [MAPK - 1] : sf*k_7*MKK_PP*MAPK/(K_7+MAPK) ; c_2 : : [MKK_PP + 1] & [MAPK_PP + 1] & [MKK_PP - 1] & [MAPK_P - 1] : sf*k_8*MKK_PP*MAPK_P/(K_8+MAPK_P) ; c_4 : : [MAPK + 1] & [MAPK_P - 1] : V_10*MAPK_P/(K_10+MAPK_P) ; c_3 : : [MAPK_P + 1] & [MAPK_PP - 1] : V_9*MAPK_PP/(K_9+MAPK_PP) ; }